Package Description Version(s)
HDF5HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data.1.10.2-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.10.2-fosscuda-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.10.2-iomkl-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.10.5-gompi-2019a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.10.5-gompi-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.10.5-gompic-2019a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.10.5-gompic-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.10.6-gompi-2020a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.10.7-gompi-2020b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.10.7-gompi-2021a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.10.7-gompic-2020b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.12.1-gompi-2021b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.12.2-gompi-2022a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.13.1-gompi-2022a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.14.0-gompi-2022b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.8.20-foss-2018a-serial: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.8.20-iomkl-2018a-serial: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
AutomakeAutomake: GNU Standards-compliant Makefile generator1.15: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.15.1-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.16.1-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.16.1-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.16.1-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.16.1-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.16.2-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.16.3-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.16.4-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.16.5-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.16.5-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
gcThe Boehm-Demers-Weiser conservative garbage collector can be used as a garbage collecting replacement for C malloc or C++ new. 7.6.12-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
7.6.12-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
dotNET-Core-Runtime.NET is a free, cross-platform, open source developer platform for building many different types of applications.2.1.5-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
kallistokallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads.0.48.0-gompi-2022a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
libsndfileLibsndfile is a C library for reading and writing files containing sampled sound (such as MS Windows WAV and the Apple/SGI AIFF format) through one standard library interface.1.0.28-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.0.28-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.0.28-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.0.28-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.1.0-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
KerasKeras is a minimalist, highly modular neural networks library, written in Python and capable of running on top of either TensorFlow or Theano.2.3.1-foss-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
VBZ-CompressionVBZ compression HDF5 plugin for nanopolish1.0.1-gompi-2020b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
giflibgiflib is a library for reading and writing gif images. It is API and ABI compatible with libungif which was in wide use while the LZW compression algorithm was patented.5.2.1-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.2.1-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.2.1-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.2.1-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
BisonBison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables. 3.0.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.0.4-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.0.4-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.0.5: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.0.5-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.0.5-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.0.5-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.3.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.3.2-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.5.3: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.5.3-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.7.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.7.1-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.7.6: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.7.6-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.7.6-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.8.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.8.2-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.8.2-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
double-conversionEfficient binary-decimal and decimal-binary conversion routines for IEEE doubles.3.1.4-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.1.5-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.1.5-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.1.5-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.1.5-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.2.0-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
GLPKThe GLPK (GNU Linear Programming Kit) package is intended for solving large-scale linear programming (LP), mixed integer programming (MIP), and other related problems. It is a set of routines written in ANSI C and organized in the form of a callable library.4.65-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.65-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.65-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.65-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.0-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
EDEMAltair EDEM discrete element method software2021.1: (custom)
PyCairoPython bindings for the cairo library1.18.0-GCCcore-8.2.0-Python-3.7.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.18.2-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.18.2-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
libyamlLibYAML is a YAML parser and emitter written in C.0.2.2-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.2.2-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.2.2-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.2.5-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.2.5-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.2.5-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.2.5-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
fastahackUtilities for indexing and sequence extraction from FASTA files.1.0.0-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.0.0-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
beocat-scriptsbeocat_scripts is a set of custom scripts for use on the Beocat cluster.default: (custom)
Dassault/PowerFLOWPowerFLOW is a Computational Fluid Dynamics Simulation Software Improving Product Design & Development2022-6: (custom)
OpenFOAM-ExtendOpenFOAM is a free, open source CFD software package. OpenFOAM has an extensive range of features to solve anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics and electromagnetics.4.0-intel-2019b-Python-2.7.16: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
GoGo is an open source programming language that makes it easy to build simple, reliable, and efficient software.1.17.3: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
MUSCLEMUSCLE is one of the best-performing multiple alignment programs according to published benchmark tests, with accuracy and speed that are consistently better than CLUSTALW. MUSCLE can align hundreds of sequences in seconds. Most users learn everything they need to know about MUSCLE in a few minutes-only a handful of command-line options are needed to perform common alignment tasks.3.8.1551-GCC-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
smithwatermansmith-waterman-gotoh alignment algorithm.20160702-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
20160702-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
zstdZstandard is a real-time compression algorithm, providing high compression ratios. It offers a very wide range of compression/speed trade-off, while being backed by a very fast decoder. It also offers a special mode for small data, called dictionary compression, and can create dictionaries from any sample set.1.4.4-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.4.5-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.4.9-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.5.0-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.5.2-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.5.2-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
PyQt5PyQt5 is a set of Python bindings for v5 of the Qt application framework from The Qt Company. This bundle includes PyQtWebEngine, a set of Python bindings for The Qt Companys Qt WebEngine framework.5.11.3-foss-2018b-Python-3.6.6: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.13.1-GCCcore-8.3.0-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.15.1-GCCcore-9.3.0-Python-3.8.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.15.5-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
M4GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc. 1.4.17: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.4.18: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.4.18-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.4.18-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.4.18-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.4.18-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.4.18-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.4.18-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.4.18-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.4.19: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.4.19-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.4.19-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.4.19-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
libwebpWebP is a modern image format that provides superior lossless and lossy compression for images on the web. Using WebP, webmasters and web developers can create smaller, richer images that make the web faster.1.1.0-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
libxsltLibxslt is the XSLT C library developed for the GNOME project (but usable outside of the Gnome platform).1.1.34-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
hwlocThe Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently. 1.11.10-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.11.11-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.11.12-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.11.8-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.2.0-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.2.0-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.4.1-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.5.0-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.7.1-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.8.0-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
libopusOpus is a totally open, royalty-free, highly versatile audio codec. Opus is unmatched for interactive speech and music transmission over the Internet, but is also intended for storage and streaming applications. It is standardized by the Internet Engineering Task Force (IETF) as RFC 6716 which incorporated technology from Skypes SILK codec and Xiph.Orgs CELT codec.1.3.1-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
libunistringThis library provides functions for manipulating Unicode strings and for manipulating C strings according to the Unicode standard. 0.9.10-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.9.10-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
SubreadHigh performance read alignment, quantification and mutation discovery2.0.6-GCC-11.3.0: (headnodes, elves-16c, heroes, dwarves, moles, wizards, warlocks)
libsodiumSodium is a modern, easy-to-use software library for encryption, decryption, signatures, password hashing and more. 1.0.17-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.0.18-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.0.18-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.0.18-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.0.18-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
matplotlibmatplotlib is a python 2D plotting library which produces publication quality figures in a variety of hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python and ipython shell, web application servers, and six graphical user interface toolkits.2.1.2-foss-2018a-Python-3.6.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.2.3-foss-2018b-Python-2.7.15: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.2.5-foss-2019b-Python-2.7.16: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.0.0-foss-2018b-Python-3.6.6: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.0.3-foss-2019a-Python-3.7.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.1.1-foss-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.1.1-fosscuda-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.2.1-foss-2020a-Python-3.8.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.3.3-foss-2020b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.3.3-fosscuda-2020b: (heroes, dwarves, wizards, warlocks)
3.4.2-foss-2021a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.4.3-foss-2021b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.5.2-foss-2021b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.5.2-foss-2022a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
SzipSzip compression software, providing lossless compression of scientific data 2.1.1-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.1.1-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.1.1-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.1.1-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.1.1-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.1.1-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.1.1-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.1.1-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.1.1-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.1.1-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
FLACFLAC stands for Free Lossless Audio Codec, an audio format similar to MP3, but lossless, meaning that audio is compressed in FLAC without any loss in quality.1.3.3-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.3.4-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
c-aresc-ares is a C library for asynchronous DNS requests (including name resolves)1.18.1-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
OctopusOctopus is a scientific program aimed at the ab initio virtual experimentation on a hopefully ever-increasing range of system types. Electrons are described quantum-mechanically within density-functional theory (DFT), in its time-dependent form (TDDFT) when doing simulations in time. Nuclei are described classically as point particles. Electron-nucleus interaction is described within the pseudopotential approximation.11.2-foss-2021a-mpi: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.4-foss-2018b-mpi: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
9.1-foss-2019b-mpi: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
RustRust is a systems programming language that runs blazingly fast, prevents segfaults, and guarantees thread safety.1.52.1-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.54.0-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.60.0-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
CMakeCMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software. 3.10.2-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.11.4-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.12.1-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.13.3-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.15.3-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.16.4-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.18.4-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.20.1-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.21.1-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.22.1-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.23.1-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.24.3-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.9.6: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
COMSOLCOMSOL Multiphysics software, an interactive environment for modeling and simulating scientific and engineering problems5.3: (custom)
5.3a: (custom)
5.4: (custom)
5.5: (custom)
5.6: (custom)
BiopythonBiopython is a set of freely available tools for biological computation written in Python by an international team of developers. It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics. 1.71-foss-2018a-Python-2.7.14: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.75-foss-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.78-foss-2020b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.79-foss-2021a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.79-foss-2021b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
Gdk-PixbufThe Gdk Pixbuf is a toolkit for image loading and pixel buffer manipulation. It is used by GTK+ 2 and GTK+ 3 to load and manipulate images. In the past it was distributed as part of GTK+ 2 but it was split off into a separate package in preparation for the change to GTK+ 3. 2.40.0-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.42.8-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
SWIGSWIG is a software development tool that connects programs written in C and C++ with a variety of high-level programming languages.3.0.12-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.0.12-foss-2018b-Python-3.6.6: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.0.12-iomkl-2018b-Python-2.7.15: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.0.1-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.0.1-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.0.2-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.0.2-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.0.2-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
ippIntel Integrated Performance Primitives (Intel IPP) is an extensive library of multicore-ready, highly optimized software functions for multimedia, data processing, and communications applications. Intel IPP offers thousands of optimized functions covering frequently used fundamental algorithms.2018.0.128: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
IPythonIPython provides a rich architecture for interactive computing with: Powerful interactive shells (terminal and Qt-based). A browser-based notebook with support for code, text, mathematical expressions, inline plots and other rich media. Support for interactive data visualization and use of GUI toolkits. Flexible, embeddable interpreters to load into your own projects. Easy to use, high performance tools for parallel computing.5.8.0-foss-2019b-Python-2.7.16: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
7.18.1-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
7.25.0-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
7.26.0-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
7.7.0-foss-2019a-Python-3.7.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
7.9.0-foss-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
7.9.0-fosscuda-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
qrupdateqrupdate is a Fortran library for fast updates of QR and Cholesky decompositions.1.1.2-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.1.2-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
CLHEPThe CLHEP project is intended to be a set of HEP-specific foundation and utility classes such as random generators, physics vectors, geometry and linear algebra. CLHEP is structured in a set of packages independent of any external package.2.4.1.0-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.4.1.3-foss-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.4.4.0-GCC-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
BWABurrows-Wheeler Aligner (BWA) is an efficient program that aligns relatively short nucleotide sequences against a long reference sequence such as the human genome.0.7.17-GCC-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.7.17-foss-2018a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.7.17-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
FriBidiThe Free Implementation of the Unicode Bidirectional Algorithm. 1.0.10-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.0.10-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.0.12-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.0.5-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.0.5-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.0.9-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
typing-extensionsTyping Extensions Backported and Experimental Type Hints for Python3.10.0.0-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.7.4.3-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
Anaconda3Built to complement the rich, open source Python community, the Anaconda platform provides an enterprise-ready data analytics platform that empowers companies to adopt a modern open data science analytics architecture. 2018.12: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2019.03: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2019.10: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.3.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
FFTW.MPIFFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.3.3.10-gompi-2022a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
PangoPango is a library for laying out and rendering of text, with an emphasis on internationalization. Pango can be used anywhere that text layout is needed, though most of the work on Pango so far has been done in the context of the GTK+ widget toolkit. Pango forms the core of text and font handling for GTK+-2.x.1.42.4-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.44.7-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.47.0-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.50.7-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
libgeotiffLibrary for reading and writing coordinate system information from/to GeoTIFF files1.4.2-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.4.2-iomkl-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.5.1-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.5.1-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.6.0-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.7.0-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.7.1-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
CUDAcoreCUDA (formerly Compute Unified Device Architecture) is a parallel computing platform and programming model created by NVIDIA and implemented by the graphics processing units (GPUs) that they produce. CUDA gives developers access to the virtual instruction set and memory of the parallel computational elements in CUDA GPUs.11.1.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
PMIxProcess Management for Exascale Environments PMI Exascale (PMIx) represents an attempt to provide an extended version of the PMI standard specifically designed to support clusters up to and including exascale sizes. The overall objective of the project is not to branch the existing pseudo-standard definitions - in fact, PMIx fully supports both of the existing PMI-1 and PMI-2 APIs - but rather to (a) augment and extend those APIs to eliminate some current restrictions that impact scalability, and (b) provide a reference implementation of the PMI-server that demonstrates the desired level of scalability. 3.1.5-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.2.3-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.1.0-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.1.2-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.2.2-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
ncbi-vdbThe SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives.2.10.0-foss-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.0.7-gompi-2022b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
MashFast genome and metagenome distance estimation using MinHash2.3-GCC-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
DIAMONDAccelerated BLAST compatible local sequence aligner0.9.22-foss-2018a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.9.30-GCC-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.0.7-GCC-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
randfoldMinimum free energy of folding randomization test software2.0.1-foss-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
CppUnitCppUnit is the C++ port of the famous JUnit framework for unit testing. 1.15.1-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
expecttestThis library implements expect tests (also known as "golden" tests). Expect tests are a method of writing tests where instead of hard-coding the expected output of a test, you run the test to get the output, and the test framework automatically populates the expected output. If the output of the test changes, you can rerun the test with the environment variable EXPECTTEST_ACCEPT=1 to automatically update the expected output.0.1.3-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.1.3-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
LAMMPSLAMMPS (Large-scale Atomic/Molecular Massively Parallel Simulator) is a classical molecular dynamics simulation code designed to run efficiently on parallel computers.3Mar2020-foss-2020a-Python-3.8.2-kokkos: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
7Aug19-foss-2019b-Python-3.7.4-omp: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
RE2RE2 is a fast, safe, thread-friendly alternative to backtracking regular expression engines like those used in PCRE, Perl, and Python. It is a C++ library. 2022-02-01-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2022-06-01-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
libvdwxclibvdwxc is a general library for evaluating energy and potential for exchange-correlation (XC) functionals from the vdW-DF family that can be used with various of density functional theory (DFT) codes.0.3.2-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.4.0-foss-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.4.0-foss-2021a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
LittleCMSLittle CMS intends to be an OPEN SOURCE small-footprint color management engine, with special focus on accuracy and performance. 2.11-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.13.1-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.9-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.9-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
Anaconda2Built to complement the rich, open source Python community, the Anaconda platform provides an enterprise-ready data analytics platform that empowers companies to adopt a modern open data science analytics architecture. 2018.12: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2019.03: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2019.10: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
rcloneRclone is a command line program to sync files and directories to and from a variety of online storage services 1.57.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
spalnSpaln (space-efficient spliced alignment) is a stand-alone program that maps and aligns a set of cDNA or protein sequences onto a whole genomic sequence in a single job.2.4.03-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
BioPerlBioperl is the product of a community effort to produce Perl code which is useful in biology. Examples include Sequence objects, Alignment objects and database searching objects.1.7.2-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.7.2-foss-2018a-Perl-5.26.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.7.2-iomkl-2018a-Perl-5.26.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.7.8-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
ABySSAssembly By Short Sequences - a de novo, parallel, paired-end sequence assembler2.1.5-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.1.5-foss-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
FFmpegA complete, cross-platform solution to record, convert and stream audio and video.4.2.1-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.2.2-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.3.1-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.3.2-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.4.2-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
OpenSSLThe OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) protocols as well as a full-strength general purpose cryptography library. 1.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
CUDACUDA (formerly Compute Unified Device Architecture) is a parallel computing platform and programming model created by NVIDIA and implemented by the graphics processing units (GPUs) that they produce. CUDA gives developers access to the virtual instruction set and memory of the parallel computational elements in CUDA GPUs.10.1.105-GCC-8.2.0-2.31.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
10.1.243-GCC-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
11.1.1-GCC-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
11.3.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
11.4.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
11.7.0: (heroes, dwarves, wizards, warlocks)
9.0.176: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
9.2.88: (warlocks)
9.2.88-GCC-7.3.0-2.30: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
SparkSpark is Hadoop MapReduce done in memory2.4.0-Hadoop-2.7-Java-1.8: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.4.6-foss-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.0.0-foss-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.2.1-foss-2021b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.3.1-foss-2022a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
ifortIntel Fortran compiler2018.1.163-GCC-6.4.0-2.28: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2018.3.222-GCC-7.3.0-2.30: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2019.1.144-GCC-8.2.0-2.31.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
PyYAMLPyYAML is a YAML parser and emitter for the Python programming language.5.1-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.1.2-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.3-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.3.1-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.4.1-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.4.1-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.0-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
protobufGoogle Protocol Buffers2.5.0-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.10.0-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.14.0-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.17.3-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.17.3-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.19.4-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.6.1-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.6.1.2-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
tcshTcsh is an enhanced, but completely compatible version of the Berkeley UNIX C shell (csh). It is a command language interpreter usable both as an interactive login shell and a shell script command processor. It includes a command-line editor, programmable word completion, spelling correction, a history mechanism, job control and a C-like syntax.6.20.00-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.22.02-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.22.02-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
gperfGNU gperf is a perfect hash function generator. For a given list of strings, it produces a hash function and hash table, in form of C or C++ code, for looking up a value depending on the input string. The hash function is perfect, which means that the hash table has no collisions, and the hash table lookup needs a single string comparison only. 3.1-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.1-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.1-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.1-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.1-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.1-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.1-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.1-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.1-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
OrthoFinderOrthoFinder is a fast, accurate and comprehensive platform for comparative genomics2.2.7-foss-2018a-Python-2.7.14: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.3.11-foss-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.3.8-foss-2019b-Python-2.7.16: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.5.4-foss-2020b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
METISMETIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes. 5.1.0-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.1.0-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.1.0-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
GenomeThreaderGenomeThreader is a software tool to compute gene structure predictions.1.7.3-Linux_x86_64-64bit: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
JAGSJAGS is Just Another Gibbs Sampler. It is a program for analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation 4.3.0-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.3.0-foss-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.3.0-foss-2020a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.3.0-foss-2020b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.3.0-foss-2022a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
sparsehashAn extremely memory-efficient hash_map implementation. 2 bits/entry overhead! The SparseHash library contains several hash-map implementations, including implementations that optimize for space or speed. 2.0.3-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.0.3-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
AutotoolsThis bundle collect the standard GNU build tools: Autoconf, Automake and libtool 20150215: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
20170619-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
20180311-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
20180311-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
20180311-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
20180311-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
20200321-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
20210128-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
20210726-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
20220317-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
20220317-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
parallelparallel: Build and execute shell commands in parallel20190222-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
20190922-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
20200522-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
20210322-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
20210622-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
20210722-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
20220722-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
QuantumESPRESSOQuantum ESPRESSO is an integrated suite of computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials (both norm-conserving and ultrasoft). 7.1-foss-2022a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
CP2KCP2K is a freely available (GPL) program, written in Fortran 95, to perform atomistic and molecular simulations of solid state, liquid, molecular and biological systems. It provides a general framework for different methods such as e.g. density functional theory (DFT) using a mixed Gaussian and plane waves approach (GPW), and classical pair and many-body potentials. 6.1-foss-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
EigenEigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms.3.3.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.3.7: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.3.7-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.3.8-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.3.9-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.3.9-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.3.9-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.4.0-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
re2cre2c is a free and open-source lexer generator for C and C++. Its main goal is generating fast lexers: at least as fast as their reasonably optimized hand-coded counterparts. Instead of using traditional table-driven approach, re2c encodes the generated finite state automata directly in the form of conditional jumps and comparisons.1.2.1-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.3-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.0.3-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.1.1-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.2-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
ParMGridGenParMGridGen is an MPI-based parallel library that is based on the serial package MGridGen, that implements (serial) algorithms for obtaining a sequence of successive coarse grids that are well-suited for geometric multigrid methods.1.0-iimpi-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
tabixppC++ wrapper to tabix indexer1.1.0-GCC-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.1.0-GCC-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
TensorFlowAn open-source software library for Machine Intelligence1.12.0-foss-2018b-Python-3.6.6: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.13.1-foss-2019a-Python-3.7.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.13.1-fosscuda-2019a-Python-3.7.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.1.0-foss-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.1.0-fosscuda-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.3.1-foss-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.3.1-fosscuda-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.4.1-foss-2020b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.4.1-fosscuda-2020b: (dwarves, wizards, warlocks)
2.6.0-foss-2021a: (headnodes, elves-16c)
2.6.2-foss-2021a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.6.2-foss-2021a-CUDA-11.3.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.7.1-foss-2021b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.7.1-foss-2021b-CUDA-11.4.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
gompicGNU Compiler Collection (GCC) based compiler toolchain along with CUDA toolkit, including OpenMPI for MPI support with CUDA features enabled.2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2019a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2020b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
ZipZip is a compression and file packaging/archive utility. Although highly compatible both with PKWARE's PKZIP and PKUNZIP utilities for MS-DOS and with Info-ZIP's own UnZip, our primary objectives have been portability and other-than-MSDOS functionality3.0-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.0-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.0-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.0-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.0-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
BRAKERBRAKER is a pipeline for fully automated prediction of protein coding genes with GeneMark-ES/ET and AUGUSTUS in novel eukaryotic genomes.2.1.5-foss-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
sickleWindowed Adaptive Trimming for fastq files using quality 1.33-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
AUGUSTUSAUGUSTUS is a program that predicts genes in eukaryotic genomic sequences3.3.3-foss-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
CapnProtoCapn Proto is an insanely fast data interchange format and capability-based RPC system.0.9.1-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
TrinityTrinity represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-Seq data. Trinity combines three independent software modules: Inchworm, Chrysalis, and Butterfly, applied sequentially to process large volumes of RNA-Seq reads.2.8.5-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.8.5-foss-2019b-Java-11: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
PCREThe PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5. 8.41-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.41-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.43-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.43-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.44-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.44-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.44-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.45-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.45-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.45-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
EasyBuildEasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.3.8.0: (warlocks)
3.8.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.0.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.1.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards)
4.1.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.2.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.3.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.3.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.4.1: (headnodes, elves-16c, heroes, dwarves, moles, wizards, warlocks)
4.4.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.5.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.5.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.6.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.7.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
picardA set of tools (in Java) for working with next generation sequencing data in the BAM format.2.18.14-Java-1.8: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.21.6-Java-11: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
HTSeqHTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.0.11.2-foss-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.11.3-foss-2020b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
SEPPSATe-enabled Phylogenetic Placement - addresses the problem of phylogenetic placement of short reads into reference alignments and trees.4.3.10-foss-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
pixmanPixman is a low-level software library for pixel manipulation, providing features such as image compositing and trapezoid rasterization. Important users of pixman are the cairo graphics library and the X server. 0.34.0-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.38.0-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.38.4-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.38.4-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.40.0-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.40.0-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
HypreHypre is a library for solving large, sparse linear systems of equations on massively parallel computers. The problems of interest arise in the simulation codes being developed at LLNL and elsewhere to study physical phenomena in the defense, environmental, energy, and biological sciences.2.14.0-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.18.2-foss-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
GhostscriptGhostscript is a versatile processor for PostScript data with the ability to render PostScript to different targets. It used to be part of the cups printing stack, but is no longer used for that.9.23-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
9.50-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
9.52-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
9.53.3-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
9.56.1-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
RAxMLRAxML search algorithm for maximum likelihood based inference of phylogenetic trees.8.2.12-gompi-2020b-hybrid-avx2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
jupyterhubJupyterHub is a multiuser version of the Jupyter (IPython) notebook designed for centralized deployments in companies, university classrooms and research labs.0.9.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
ArrowApache Arrow (incl. PyArrow Python bindings), a cross-language development platform for in-memory data.0.16.0-foss-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.0.0-foss-2021b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.0.0-foss-2022a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
Miniconda3Miniconda is a free minimal installer for conda. It is a small, bootstrap version of Anaconda that includes only conda, Python, the packages they depend on, and a small number of other useful packages.4.4.10: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.7.10: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.9.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
CufflinksTranscript assembly, differential expression, and differential regulation for RNA-Seq2.2.1-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.2.1-foss-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
PillowPillow is the 'friendly PIL fork' by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lundh and Contributors.6.0.0-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.2.1-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
7.0.0-GCCcore-9.3.0-Python-3.8.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.0.1-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.2.0-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.3.2-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
9.1.1-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
libfabricLibfabric is a core component of OFI. It is the library that defines and exports the user-space API of OFI, and is typically the only software that applications deal with directly. It works in conjunction with provider libraries, which are often integrated directly into libfabric. 1.11.0-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.12.1-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.13.2-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.15.1-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.16.1-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
intervaltreeAn interval tree can be used to efficiently find a set of numeric intervals overlapping or containing another interval. This library provides a basic implementation of an interval tree using C++ templates, allowing the insertion of arbitrary types into the tree. 0.1-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.1-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
h5pyHDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous amounts of data.2.10.0-foss-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.10.0-foss-2020a-Python-3.8.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.10.0-fosscuda-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.8.0-foss-2018b-Python-3.6.6: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.8.0-fosscuda-2018b-Python-3.6.6: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.9.0-foss-2019a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.9.0-fosscuda-2019a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.2.1-foss-2021a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.6.0-foss-2021b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
cURLlibcurl is a free and easy-to-use client-side URL transfer library, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling and more. 7.60.0-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
7.63.0-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
7.66.0-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
7.69.1-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
7.72.0-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
7.76.0-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
7.78.0-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
7.83.0-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
7.86.0-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
LMDBLMDB is a fast, memory-efficient database. With memory-mapped files, it has the read performance of a pure in-memory database while retaining the persistence of standard disk-based databases.0.9.21-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.9.22-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.9.24-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.9.24-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.9.28-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.9.29-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.9.29-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
CheckCheck is a unit testing framework for C. It features a simple interface for defining unit tests, putting little in the way of the developer. Tests are run in a separate address space, so both assertion failures and code errors that cause segmentation faults or other signals can be caught. Test results are reportable in the following: Subunit, TAP, XML, and a generic logging format.0.15.2-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
wheelA built-package format for Python.0.31.1-foss-2018b-Python-3.6.6: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.31.1-fosscuda-2018b-Python-3.6.6: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
STARSTAR aligns RNA-seq reads to a reference genome using uncompressed suffix arrays.2.7.5c-GCC-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
DMTCPDMTCP (Distributed MultiThreaded Checkpointing) transparently checkpoints a single-host or distributed computation in user-space -- with no modifications to user code or to the O/S. It works on most Linux applications, including Python, Matlab, R, GUI desktops, MPI, etc.2.5.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
cairoCairo is a 2D graphics library with support for multiple output devices. Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers, PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB1.14.12-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.16.0-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.16.0-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.16.0-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.16.0-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.17.4-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
PerlLarry Wall's Practical Extraction and Report Language5.26.1-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.28.0-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.28.1-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.30.0-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.30.2-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.32.0-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.32.1-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.32.1-GCCcore-10.3.0-minimal: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.34.0-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.34.1-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.36.0-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.36.0-GCCcore-12.2.0-minimal: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
LuaLua is a powerful, fast, lightweight, embeddable scripting language. Lua combines simple procedural syntax with powerful data description constructs based on associative arrays and extensible semantics. Lua is dynamically typed, runs by interpreting bytecode for a register-based virtual machine, and has automatic memory management with incremental garbage collection, making it ideal for configuration, scripting, and rapid prototyping.5.4.2-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
PyTorchTensors and Dynamic neural networks in Python with strong GPU acceleration. PyTorch is a deep learning framework that puts Python first.1.11.0-foss-2021a-CUDA-11.3.1: (heroes, dwarves, wizards, warlocks)
1.12.1-foss-2022a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.12.1-foss-2022a-CUDA-11.7.0: (heroes, dwarves, wizards, warlocks)
1.7.1-foss-2020b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.7.1-fosscuda-2020b: (dwarves, wizards, warlocks)
NGSNGS is a new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing.2.10.0-GCCcore-8.3.0-Java-11: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
PROJProgram proj is a standard Unix filter function which converts geographic longitude and latitude coordinates into cartesian coordinates5.0.0-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.0.0-iomkl-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.2.1-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
7.0.0-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
7.2.1-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.1.0-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
9.0.0-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
freeglutfreeglut is a completely OpenSourced alternative to the OpenGL Utility Toolkit (GLUT) library.3.0.0-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.2.1-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
Octave-KernelThe Octave kernel for the 'Jupyter' environment executes Octave code which the front-end (Jupyter Notebook or other front-ends) submits to the kernel via the network.0.31.1-foss-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
fsomA tiny C library for managing SOM (Self-Organizing Maps) neural networks.20141119-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
20141119-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
MavenBinary maven install, Apache Maven is a software project management and comprehension tool. Based on the concept of a project object model (POM), Maven can manage a project's build, reporting and documentation from a central piece of information. 3.6.3: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
yaml-cppyaml-cpp is a YAML parser and emitter in C++ matching the YAML 1.2 spec0.7.0-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
GATKThe Genome Analysis Toolkit or GATK is a software package developed at the Broad Institute to analyse next-generation resequencing data. The toolkit offers a wide variety of tools, with a primary focus on variant discovery and genotyping as well as strong emphasis on data quality assurance. Its robust architecture, powerful processing engine and high-performance computing features make it capable of taking on projects of any size.4.0.5.1-foss-2018a-Python-3.6.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.1.4.1-GCCcore-8.3.0-Java-11: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
TrimmomaticTrimmomatic performs a variety of useful trimming tasks for illumina paired-end and single ended data.The selection of trimming steps and their associated parameters are supplied on the command line. 0.38-Java-1.8: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.39-Java-11: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
makeinfomakeinfo is part of the Texinfo project, the official documentation format of the GNU project. This is a minimal build with very basic functionality. Should only be used for build dependencies. 6.7-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.7-GCCcore-10.3.0-minimal: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
GCCcoreThe GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
GCCThe GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.4.0-2.28: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
7.3.0-2.30: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.2.0-2.31.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
TkinterTkinter module, built with the Python buildsystem2.7.15-foss-2018b-Python-2.7.15: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.7.16-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.10.4-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.6.4-foss-2018a-Python-3.6.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.6.6-foss-2018b-Python-3.6.6: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.7.2-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.7.4-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.8.2-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.8.6-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.9.5-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.9.6-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
at-spi2-coreAssistive Technology Service Provider Interface. 2.38.0-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
flatbuffersFlatBuffers: Memory Efficient Serialization Library1.12.0-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.12.0-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.0.0-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.0.0-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
AFNIAFNI is a set of C programs for processing, analyzing, and displaying functional MRI (FMRI) data - a technique for mapping human brain activity.18.3.00-foss-2018b-Python-3.6.6: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
19.3.18-foss-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
20.3.03-foss-2020a-Python-3.8.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
imklIntel oneAPI Math Kernel Library2018.1.163-iompi-2018a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2018.3.222-iompi-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2019.1.144-iompi-2019.01: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2019.5.281-iimpi-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2019.5.281-iompi-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2020.1.217-iompi-2020a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2020.4.304-iompi-2020b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2021.2.0-iimpi-2021a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2021.2.0-iompi-2021a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
libgtextutilsligtextutils is a dependency of fastx-toolkit and is provided via the same upstream0.7-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.7-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
multichoosegenerate multiset combinations (n multichoose k).1.0.3-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.0.3-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
FastQCFastQC is a quality control application for high throughput sequence data. It reads in sequence data in a variety of formats and can either provide an interactive application to review the results of several different QC checks, or create an HTML based report which can be integrated into a pipeline.0.11.8-Java-1.8: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.11.9-Java-11: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
libarchiveMulti-format archive and compression library 3.4.3-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.5.1-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.5.1-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.6.1-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.6.1-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
GeneMark-ETEukaryotic gene prediction suite with automatic training4.61-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
prodigalProdigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program developed at Oak Ridge National Laboratory and the University of Tennessee.2.6.3-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
utf8procutf8proc is a small, clean C library that provides Unicode normalization, case-folding, and other operations for data in the UTF-8 encoding.2.6.1-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.7.0-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
NASMNASM: General-purpose x86 assembler2.13.03-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.13.03-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.14.02-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.14.02-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.14.02-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.15.05-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.15.05-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.15.05-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.15.05-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.15.05-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
GPAW-setupsPAW setup for the GPAW Density Functional Theory package. Users can install setups manually using 'gpaw install-data' or use setups from this package. The versions of GPAW and GPAW-setups can be intermixed.0.9.20000: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
ImageMagickImageMagick is a software suite to create, edit, compose, or convert bitmap images7.0.10-1-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
7.0.10-35-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
7.0.9-5-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
7.1.0-37-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
ATKATK provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications. 2.34.1-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.36.0-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.38.0-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
OrthoMCLOrthoMCL is a genome-scale algorithm for grouping orthologous protein sequences.2.0.9-foss-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
PLINKplink-1.9-x86_64: Whole-genome association analysis toolset1.9b_6.16-x86_64: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
OpenCVOpenCV (Open Source Computer Vision Library) is an open source computer vision and machine learning software library. OpenCV was built to provide a common infrastructure for computer vision applications and to accelerate the use of machine perception in the commercial products.4.5.1-foss-2020b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.5.1-fosscuda-2020b: (heroes, dwarves, wizards, warlocks)
ParaViewParaView is a scientific parallel visualizer.5.4.1-foss-2018b-mpi: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.6.2-foss-2019b-Python-3.7.4-mpi: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.8.0-foss-2020a-Python-3.8.2-mpi: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.9.1-foss-2021a-mpi: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
X11The X Window System (X11) is a windowing system for bitmap displays20180131-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
20180604-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
20190311-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
20190717-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
20200222-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
20201008-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
20210518-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
20210802-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
20220504-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
graphvizGraphviz is open source graph visualization software.2.40.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
BamToolsBamTools provides both a programmer's API and an end-user's toolkit for handling BAM files.2.5.1-GCC-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
UDUNITSUDUNITS supports conversion of unit specifications between formatted and binary forms, arithmetic manipulation of units, and conversion of values between compatible scales of measurement.2.2.26-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.2.26-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.2.26-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.2.26-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.2.28-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
Qt5Qt is a comprehensive cross-platform C++ application framework.5.10.1-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.13.1-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.14.1-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.14.2-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.15.2-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.15.5-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
LibintLibint library is used to evaluate the traditional (electron repulsion) and certain novel two-body matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.1.1.6-GCC-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.5.0-gompi-2019b: (warlocks)
libreadlineThe GNU Readline library provides a set of functions for use by applications that allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. The Readline library includes additional functions to maintain a list of previously-entered command lines, to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands. 7.0-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
7.0-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.0-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.0-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.0-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.0-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.1-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.1-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.1.2-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.2-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
pkgconfigpkgconfig is a Python module to interface with the pkg-config command line tool1.3.1-foss-2018b-Python-3.6.6: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.3.1-fosscuda-2018b-Python-3.6.6: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.5.1-GCCcore-10.2.0-python: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.5.1-GCCcore-8.2.0-python: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.5.1-GCCcore-8.3.0-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.5.1-GCCcore-9.3.0-Python-3.8.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.5.4-GCCcore-10.3.0-python: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.5.5-GCCcore-11.2.0-python: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
ClangC, C++, Objective-C compiler, based on LLVM. Does not include C++ standard library -- use libstdc++ from GCC.7.0.0-GCC-6.4.0-2.28: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
ParMETISParMETIS is an MPI-based parallel library that implements a variety of algorithms for partitioning unstructured graphs, meshes, and for computing fill-reducing orderings of sparse matrices. ParMETIS extends the functionality provided by METIS and includes routines that are especially suited for parallel AMR computations and large scale numerical simulations. The algorithms implemented in ParMETIS are based on the parallel multilevel k-way graph-partitioning, adaptive repartitioning, and parallel multi-constrained partitioning schemes.4.0.3-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.0.3-iimpi-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
bokehStatistical and novel interactive HTML plots for Python1.3.4-foss-2019a-Python-3.7.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.0.2-foss-2020a-Python-3.8.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
pybind11pybind11 is a lightweight header-only library that exposes C++ types in Python and vice versa, mainly to create Python bindings of existing C++ code.2.4.3-GCCcore-8.3.0-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.4.3-GCCcore-9.3.0-Python-3.8.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.6.0-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.6.2-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.7.1-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.9.2-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
MesaMesa is an open-source implementation of the OpenGL specification - a system for rendering interactive 3D graphics.18.1.1-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
19.1.7-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
20.0.2-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
20.2.1-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
21.1.1-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
22.0.3-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
MPFRThe MPFR library is a C library for multiple-precision floating-point computations with correct rounding. 4.0.1-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.0.2-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.1.0-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.1.0-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.1.0-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
libidnGNU Libidn is a fully documented implementation of the Stringprep, Punycode and IDNA specifications. Libidn's purpose is to encode and decode internationalized domain names.1.36-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
ASEASE is a python package providing an open source Atomic Simulation Environment in the Python scripting language. From version 3.20.1 we also include the ase-ext package, it contains optional reimplementations in C of functions in ASE. ASE uses it automatically when installed.3.16.2-foss-2018b-Python-2.7.15: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.16.2-foss-2018b-Python-3.6.6: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.19.0-foss-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.22.1-foss-2021a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
libxsmmLIBXSMM is a library for small dense and small sparse matrix-matrix multiplications targeting Intel Architecture (x86).1.10-GCC-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
VTKThe Visualization Toolkit (VTK) is an open-source, freely available software system for 3D computer graphics, image processing and visualization. VTK consists of a C++ class library and several interpreted interface layers including Tcl/Tk, Java, and Python. VTK supports a wide variety of visualization algorithms including: scalar, vector, tensor, texture, and volumetric methods; and advanced modeling techniques such as: implicit modeling, polygon reduction, mesh smoothing, cutting, contouring, and Delaunay triangulation.8.2.0-foss-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.2.0-foss-2020a-Python-3.8.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
GlobalArraysGlobal Arrays (GA) is a Partitioned Global Address Space (PGAS) programming model5.7.2-iomkl-2019b-peigs: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
XZxz: XZ utilities5.2.3-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.2.4-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.2.4-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.2.4-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.2.5-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.2.5-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.2.5-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.2.5-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.2.5-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.2.7-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
libunwindThe primary goal of libunwind is to define a portable and efficient C programming interface (API) to determine the call-chain of a program. The API additionally provides the means to manipulate the preserved (callee-saved) state of each call-frame and to resume execution at any point in the call-chain (non-local goto). The API supports both local (same-process) and remote (across-process) operation. As such, the API is useful in a number of applications1.2.1-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.3.1-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.3.1-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.4.0-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.4.0-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.6.2-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
BLAST+Basic Local Alignment Search Tool, or BLAST, is an algorithm for comparing primary biological sequence information, such as the amino-acid sequences of different proteins or the nucleotides of DNA sequences.2.11.0-gompi-2020b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.14.1-gompi-2022b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.7.1-foss-2018a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.7.1-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.9.0-gompi-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
StacksStacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography. 2.53-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.54-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
FLTKFLTK is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows, and MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL and its built-in GLUT emulation.1.3.4-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.3.5-GCC-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
QhullQhull computes the convex hull, Delaunay triangulation, Voronoi diagram, halfspace intersection about a point, furthest-site Delaunay triangulation, and furthest-site Voronoi diagram. The source code runs in 2-d, 3-d, 4-d, and higher dimensions. Qhull implements the Quickhull algorithm for computing the convex hull. 2015.2-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2019.1-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2020.2-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2020.2-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2020.2-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
VMDVMD is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting.1.9.3-foss-2019b-Python-2.7.16: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
FFTWFFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.3.3.10-GCC-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.3.10-gompi-2021b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.3.7-gompi-2018a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.3.8-gompi-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.3.8-gompi-2019a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.3.8-gompi-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.3.8-gompi-2020a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.3.8-gompi-2020b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.3.8-gompic-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.3.8-gompic-2019a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.3.8-gompic-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.3.8-gompic-2020b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.3.8-iomkl-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.3.9-gompi-2021a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
SOCISOCI is a database access library for C++ that makes the illusion of embedding SQL queries in the regular C++ code, staying entirely within the Standard C++.4.0.1-GCC-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.0.3-GCC-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
libepoxyEpoxy is a library for handling OpenGL function pointer management for you1.5.4-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
xpropThe xprop utility is for displaying window and font properties in an X server. One window or font is selected using the command line arguments or possibly in the case of a window, by clicking on the desired window. A list of properties is then given, possibly with formatting information.1.2.3-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.2.4-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
NWChemNWChem aims to provide its users with computational chemistry tools that are scalable both in their ability to treat large scientific computational chemistry problems efficiently, and in their use of available parallel computing resources from high-performance parallel supercomputers to conventional workstation clusters. NWChem software can handle: biomolecules, nanostructures, and solid-state; from quantum to classical, and all combinations; Gaussian basis functions or plane-waves; scaling from one to thousands of processors; properties and relativity.6.8.1.revision133-iomkl-2018b-2018-06-14-Python-2.7.15: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
7.0.0-iomkl-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
NLoptNLopt is a free/open-source library for nonlinear optimization, providing a common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms. 2.4.2-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.6.1-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.6.1-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.6.2-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.7.1-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
FlexiBLASFlexiBLAS is a wrapper library that enables the exchange of the BLAS and LAPACK implementation used by a program without recompiling or relinking it.3.0.4-GCC-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.0.4-GCC-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.2.0-GCC-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
DBBerkeley DB enables the development of custom data management solutions, without the overhead traditionally associated with such custom projects.18.1.40-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
18.1.40-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
18.1.40-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
18.1.40-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
18.1.40-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
antApache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other. The main known usage of Ant is the build of Java applications.1.10.11-Java-11: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.10.5-Java-1.8: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.10.7-Java-11: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.10.8-Java-11: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.10.9-Java-11: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
daskDask natively scales Python. Dask provides advanced parallelism for analytics, enabling performance at scale for the tools you love.2.3.0-foss-2019a-Python-3.7.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
arpack-ngARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.3.5.0-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.7.0-foss-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
NCCLThe NVIDIA Collective Communications Library (NCCL) implements multi-GPU and multi-node collective communication primitives that are performance optimized for NVIDIA GPUs.2.10.3-GCCcore-10.3.0-CUDA-11.3.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.10.3-GCCcore-11.2.0-CUDA-11.4.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.12.12-GCCcore-11.3.0-CUDA-11.7.0: (heroes, dwarves, wizards, warlocks)
2.3.7-fosscuda-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.4.2-gcccuda-2019a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.4.8-gcccuda-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.8.3-CUDA-11.1.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
fossGNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.2018a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2019a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2020a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2020b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2021a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2021b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2022a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
GEOSGEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS)3.10.3-GCC-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.6.2-foss-2018b-Python-3.6.6: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.6.2-iomkl-2018b-Python-2.7.15: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.8.0-foss-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.8.1-GCC-9.3.0-Python-3.8.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.9.1-GCC-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.9.1-GCC-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
UCXUnified Communication X An open-source production grade communication framework for data centric and high-performance applications 1.10.0-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.11.2-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.12.1-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.13.1-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.8.0-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.9.0-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.9.0-GCCcore-10.2.0-CUDA-11.1.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
UCCUCC (Unified Collective Communication) is a collective communication operations API and library that is flexible, complete, and feature-rich for current and emerging programming models and runtimes. 1.0.0-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.1.0-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
ExonerateExonerate is a generic tool for pairwise sequence comparison. It allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics. 2.4.0-GCC-6.4.0-2.28: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.4.0-GCC-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
VTuneIntel VTune Amplifier XE is the premier performance profiler for C, C++, C#, Fortran, Assembly and Java.2021.6.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
LLVMThe LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs (as well as some less common ones!) These libraries are built around a well specified code representation known as the LLVM intermediate representation ("LLVM IR"). The LLVM Core libraries are well documented, and it is particularly easy to invent your own language (or port an existing compiler) to use LLVM as an optimizer and code generator.11.0.0-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
11.1.0-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
12.0.1-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
14.0.3-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.0.0-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.0.1-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
9.0.0-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
9.0.1-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
cutadaptCutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads.2.8-GCCcore-8.3.0-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
VASPThe Vienna Ab initio Simulation Package (VASP) is a computer program for atomic scale materials modelling, e.g. electronic structure calculations and quantum-mechanical molecular dynamics, from first principles.5.4.4-foss-2018a-dimer-beef-sol: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.4.4-fosscuda-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.4.4-fosscuda-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.4.4-iomkl-2019b-dimer-beef-sol: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
MCLThe MCL algorithm is short for the Markov Cluster Algorithm, a fast and scalable unsupervised cluster algorithm for graphs (also known as networks) based on simulation of (stochastic) flow in graphs. 14.137-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
14.137-GCCcore-6.4.0-Perl-5.26.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
14.137-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
GL2PSGL2PS: an OpenGL to PostScript printing library1.4.0-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.4.0-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
GTK2The GTK+ 2 package contains libraries used for creating graphical user interfaces for applications. 2.24.33-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
nettleNettle is a cryptographic library that is designed to fit easily in more or less any context: In crypto toolkits for object-oriented languages (C++, Python, Pike, ...), in applications like LSH or GNUPG, or even in kernel space.3.4-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.5.1-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.6-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.8-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
RR is a free software environment for statistical computing and graphics.3.5.1-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.6.2-foss-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.0.0-foss-2020a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.0.4-foss-2020b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.2.1-foss-2022a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
FastMEFastME: a comprehensive, accurate and fast distance-based phylogeny inference program.2.1.6.1-GCC-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.1.6.1-GCC-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.1.6.1-foss-2018a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
SCOTCHSoftware package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.6.0.6-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.0.9-gompi-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.0.9-iimpi-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
IRkernelThe R kernel for the 'Jupyter' environment executes R code which the front-end (Jupyter Notebook or other front-ends) submits to the kernel via the network.1.1-foss-2019b-R-3.6.2-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
libgit2libgit2 is a portable, pure C implementation of the Git core methods provided as a re-entrant linkable library with a solid API, allowing you to write native speed custom Git applications in any language which supports C bindings.1.4.3-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
MUMmerMUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. AMOS makes use of it.4.0.0beta2-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.0.0beta2-foss-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
FlaskFlask is a lightweight WSGI web application framework. It is designed to make getting started quick and easy, with the ability to scale up to complex applications. This module includes the Flask extensions: Flask-Cors1.1.4-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
FreeSurferFreeSurfer is a set of tools for analysis and visualization of structural and functional brain imaging data. FreeSurfer contains a fully automatic structural imaging stream for processing cross sectional and longitudinal data.6.0.0-centos6_x86_64: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.0.1-centos6_x86_64: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
7.1.1-centos7_x86_64: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
libeventThe libevent API provides a mechanism to execute a callback function when a specific event occurs on a file descriptor or after a timeout has been reached. Furthermore, libevent also support callbacks due to signals or regular timeouts. 2.1.11-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.1.11-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.1.12-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.1.12-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.1.12-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.1.12-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.1.12-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
HadoopHadoop MapReduce by Cloudera2.9.2-GCCcore-8.3.0-native: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
QUASTQUAST evaluates genome assemblies by computing various metrics. It works both with and without reference genomes. The tool accepts multiple assemblies, thus is suitable for comparison.4.6.3-foss-2018a-Python-3.6.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.0.2-foss-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
libtirpcLibtirpc is a port of Suns Transport-Independent RPC library to Linux.1.3.1-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.3.2-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.3.2-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
networkxNetworkX is a Python package for the creation, manipulation, and study of the structure, dynamics, and functions of complex networks.2.4-foss-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.6.3-foss-2021b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
x264x264 is a free software library and application for encoding video streams into the H.264/MPEG-4 AVC compression format, and is released under the terms of the GNU GPL. 20190925-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
20191217-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
20201026-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
20210414-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
20220620-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
x265x265 is a free software library and application for encoding video streams into the H.265 AVC compression format, and is released under the terms of the GNU GPL. 3.2-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.3-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.3-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.5-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.5-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
ZeroMQZeroMQ looks like an embeddable networking library but acts like a concurrency framework. It gives you sockets that carry atomic messages across various transports like in-process, inter-process, TCP, and multicast. You can connect sockets N-to-N with patterns like fanout, pub-sub, task distribution, and request-reply. It's fast enough to be the fabric for clustered products. Its asynchronous I/O model gives you scalable multicore applications, built as asynchronous message-processing tasks. It has a score of language APIs and runs on most operating systems.4.3.2-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.3.2-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.3.3-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.3.4-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.3.4-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
OpenBLASOpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.0.2.20-GCC-6.4.0-2.28: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.3.1-GCC-7.3.0-2.30: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.3.12-GCC-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.3.15-GCC-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.3.18-GCC-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.3.20-GCC-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.3.5-GCC-8.2.0-2.31.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.3.7-GCC-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.3.9-GCC-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
EBSeqThis R/Bioconductor package provides Differential Expression analysis at both gene and isoform level using RNA-seq data1.26.0-foss-2018b-R-3.5.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.26.0-foss-2019b-R-3.6.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
GMPGMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers. 6.1.2-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.1.2-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.1.2-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.1.2-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.2.0-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.2.0-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.2.1-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.2.1-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.2.1-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.2.1-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
jaxComposable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more0.3.23-foss-2021b-CUDA-11.4.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
flatbuffers-pythonPython Flatbuffers runtime library.1.12-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.0-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.0-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.0-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
BowtieBowtie is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome.1.2.2-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.2.3-GCC-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
SAGEMathSageMath is a free open-source mathematics software system.9.0: (custom)
ViennaRNAThe Vienna RNA Package consists of a C code library and several stand-alone programs for the prediction and comparison of RNA secondary structures.2.4.14-foss-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
fontconfigFontconfig is a library designed to provide system-wide font configuration, customization and application access. 2.12.6-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.13.0-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.13.1-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.13.1-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.13.92-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.13.92-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.13.93-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.13.94-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.14.0-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
BazelBazel is a build tool that builds code quickly and reliably. It is used to build the majority of Google's software.0.18.0-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.20.0-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.29.1-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.4.1-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.7.2-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.7.2-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.7.2-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.1.1-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
OctaveGNU Octave is a high-level interpreted language, primarily intended for numerical computations.4.4.1-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.1.0-foss-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
GPAWGPAW is a density-functional theory (DFT) Python code based on the projector-augmented wave (PAW) method and the atomic simulation environment (ASE). It uses real-space uniform grids and multigrid methods or atom-centered basis-functions.1.4.0-foss-2018b-Python-2.7.15: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.4.0-foss-2018b-Python-3.6.6: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
20.1.0-foss-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
22.8.0-foss-2021a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
libdeflateHeavily optimized library for DEFLATE/zlib/gzip compression and decompression.1.10-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
Bowtie2Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes.2.3.4.2-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.3.5.1-GCC-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
freetypeFreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display servers, font conversion tools, text image generation tools, and many other products as well. 2.10.1-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.10.1-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.10.3-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.10.4-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.11.0-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.12.1-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.9-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.9.1-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.9.1-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
ValgrindValgrind: Debugging and profiling tools3.16.1-gompi-2020a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
iimpiIntel C/C++ and Fortran compilers, alongside Intel MPI.2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2021a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
AlphaFoldAlphaFold can predict protein structures with atomic accuracy even where no similar structure is known2.3.0-foss-2021b-CUDA-11.4.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
YasmYasm: Complete rewrite of the NASM assembler with BSD license1.3.0-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.3.0-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.3.0-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.3.0-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.3.0-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
archspecA library for detecting, labeling, and reasoning about microarchitectures0.1.0-GCCcore-9.3.0-Python-3.8.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
util-linuxSet of Linux utilities2.31.1-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.32-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.33-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.34-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.35-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.36-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.36-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.37-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.38-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
CFITSIOCFITSIO is a library of C and Fortran subroutines for reading and writing data files in FITS (Flexible Image Transport System) data format.3.45-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.47-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
PysamPysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.0.15.3-GCC-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.16.0.1-GCC-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
BrotliBrotli is a generic-purpose lossless compression algorithm that compresses data using a combination of a modern variant of the LZ77 algorithm, Huffman coding and 2nd order context modeling, with a compression ratio comparable to the best currently available general-purpose compression methods. It is similar in speed with deflate but offers more dense compression. The specification of the Brotli Compressed Data Format is defined in RFC 7932.1.0.9-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.0.9-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.0.9-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
XML-ParserThis is a Perl extension interface to James Clark's XML parser, expat.2.44_01-GCCcore-6.4.0-Perl-5.26.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.44_01-GCCcore-7.3.0-Perl-5.28.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
ADDAADDA is an open-source parallel implementation of the discrete dipole approximation, capable to simulate light scattering by particles of arbitrary shape and composition in a wide range of particle sizes.1.4.0-foss-2020a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
RSEMRNA-Seq by Expectation-Maximization1.3.2-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.3.2-foss-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
libvorbisOgg Vorbis is a fully open, non-proprietary, patent-and-royalty-free, general-purpose compressed audio format1.3.7-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.3.7-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
XML-LibXMLPerl binding for libxml22.0132-GCCcore-6.4.0-Perl-5.26.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.0201-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.0206-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
pkgconfpkgconf is a program which helps to configure compiler and linker flags for development libraries. It is similar to pkg-config from freedesktop.org.1.8.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.8.0-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.9.3-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
SciPy-bundleBundle of Python packages for scientific software2019.03-foss-2019a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2019.03-fosscuda-2019a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2019.10-foss-2019b-Python-2.7.16: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2019.10-foss-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2019.10-fosscuda-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2020.03-foss-2020a-Python-3.8.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2020.11-foss-2020b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2020.11-fosscuda-2020b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2021.05-foss-2021a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2021.10-foss-2021b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2022.05-foss-2022a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
libpciaccessGeneric PCI access library.0.14-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.14-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.14-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.14-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.16-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.16-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.16-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.16-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.16-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.17-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
tbbIntel(R) Threading Building Blocks (Intel(R) TBB) lets you easily write parallel C++ programs that take full advantage of multicore performance, that are portable, composable and have future-proof scalability.2018_U5-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2019_U9-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2020.1-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
JasPerThe JasPer Project is an open-source initiative to provide a free software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard. 2.0.14-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.0.14-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.0.14-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.0.24-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.0.28-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.0.33-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.0.33-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
jemallocjemalloc is a general purpose malloc(3) implementation that emphasizes fragmentation avoidance and scalable concurrency support.5.2.1-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
BoostBoost provides free peer-reviewed portable C++ source libraries.1.66.0-foss-2018a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.66.0-foss-2018a-Python-2.7.14: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.67.0-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.71.0-gompi-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.72.0-gompi-2020a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.74.0-GCC-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.76.0-GCC-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.77.0-GCC-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.79.0-GCC-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.81.0-GCC-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
gompiGNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support.2018a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2019a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2020a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2020b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2021a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2021b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2022a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2022b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
ScaFaCoSScaFaCoS is a library of scalable fast coulomb solvers.1.0.1-foss-2020a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
DBusD-Bus is a message bus system, a simple way for applications to talk to one another. In addition to interprocess communication, D-Bus helps coordinate process lifecycle; it makes it simple and reliable to code a "single instance" application or daemon, and to launch applications and daemons on demand when their services are needed. 1.13.12-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.13.12-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.13.18-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.13.18-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.13.6-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.14.0-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
LibTIFFtiff: Library and tools for reading and writing TIFF data files4.0.10-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.0.10-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.0.9-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.1.0-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.1.0-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.2.0-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.3.0-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.3.0-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
OpenEXROpenEXR is a high dynamic-range (HDR) image file format developed by Industrial Light & Magic for use in computer imaging applications2.5.5-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
netCDF-FortranNetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.4.5.2-gompi-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
molmodMolMod is a Python library with many compoments that are useful to write molecular modeling programs.1.4.5-foss-2020a-Python-3.8.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
snakemakeThe Snakemake workflow management system is a tool to create reproducible and scalable data analyses.5.24.1-foss-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
libpnglibpng is the official PNG reference library1.6.34-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.6.34-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.6.36-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.6.37-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.6.37-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.6.37-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.6.37-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.6.37-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.6.37-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.6.38-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
libgdGD is an open source code library for the dynamic creation of images by programmers.2.2.5-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.2.5-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.3.0-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
TopHatTopHat is a fast splice junction mapper for RNA-Seq reads.2.1.2-foss-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
ROOTThe ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data in a very efficient way.6.14.06-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
JellyfishJellyfish is a tool for fast, memory-efficient counting of k-mers in DNA.2.2.10-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.3.0-GCC-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.3.0-GCC-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
OpenPGMOpenPGM is an open source implementation of the Pragmatic General Multicast (PGM) specification in RFC 3208 available at www.ietf.org. PGM is a reliable and scalable multicast protocol that enables receivers to detect loss, request retransmission of lost data, or notify an application of unrecoverable loss. PGM is a receiver-reliable protocol, which means the receiver is responsible for ensuring all data is received, absolving the sender of reception responsibility. 5.2.122-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.2.122-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.2.122-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.2.122-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.2.122-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
KalignKalign is a fast multiple sequence alignment program for biological sequences.3.3.1-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.3.2-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
cppyA small C++ header library which makes it easier to write Python extension modules. The primary feature is a PyObject smart pointer which automatically handles reference counting and provides convenience methods for performing common object operations.1.1.0-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.1.0-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.2.1-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
ipyradipyrad is an interactive toolkit for assembly and analysis of restriction-site associated genomic data sets (e.g., RAD, ddRAD, GBS) for population genetic and phylogenetic studies.0.9.51-foss-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
GraphicsMagickGraphicsMagick is the swiss army knife of image processing.1.3.31-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.3.34-foss-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
hypothesisHypothesis is an advanced testing library for Python. It lets you write tests which are parametrized by a source of examples, and then generates simple and comprehensible examples that make your tests fail. This lets you find more bugs in your code with less work.5.41.2-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.41.5-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.13.1-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.14.6-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.46.7-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
BEEFBEEF is a library-based implementation of the Bayesian Error Estimation Functional, suitable for linking against by Fortran- or C-based DFT codes. A description of BEEF can be found at http://dx.doi.org/10.1103/PhysRevB.85.235149.0.1.3-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.1.3-foss-2018a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.1.3-iomkl-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
PLUMEDPLUMED is an open source library for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines. Free energy calculations can be performed as a function of many order parameters with a particular focus on biological problems, using state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. The software, written in C++, can be easily interfaced with both fortran and C/C++ codes. 2.5.3-foss-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.6.0-foss-2020a-Python-3.8.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
libiconvLibiconv converts from one character encoding to another through Unicode conversion1.16-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.16-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.16-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.16-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.17-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
TclTcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more. 8.6.10-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.6.10-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.6.11-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.6.11-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.6.12-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.6.12-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.6.7-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.6.8-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.6.8-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.6.9-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.6.9-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
QIIME2QIIME is an open-source bioinformatics pipeline for performing microbiome analysis from raw DNA sequencing data.2018.8: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2019.7: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2021.8: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
MesquiteMesh-Quality Improvement Library2.3.0-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
Geant4Geant4 is a toolkit for the simulation of the passage of particles through matter. Its areas of application include high energy, nuclear and accelerator physics, as well as studies in medical and space science.10.5-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
10.6-foss-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
10.7.1-GCC-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
DB_FilePerl5 access to Berkeley DB version 1.x.1.855-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
at-spi2-atkAT-SPI 2 toolkit bridge2.38.0-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
SPAdesGenome assembler for single-cell and isolates data sets3.11.1-foss-2018a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.14.0-GCC-8.3.0-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
dotNET-Core-SDK.NET is a free, cross-platform, open source developer platform for building many different types of applications.2.1.403-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
libGLUThe OpenGL Utility Library (GLU) is a computer graphics library for OpenGL. 9.0.0-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
9.0.1-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
9.0.1-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
9.0.1-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
9.0.1-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
9.0.2-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
HISAT2HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) against the general human population (as well as against a single reference genome).2.1.0-foss-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
gcccudaGNU Compiler Collection (GCC) based compiler toolchain, along with CUDA toolkit.2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2019a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2020b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
spglib-pythonSpglib for Python. Spglib is a library for finding and handling crystal symmetries written in C.1.16.1-foss-2021a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
lpsolveMixed Integer Linear Programming (MILP) solver5.5.2.5-GCC-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
Boost.PythonBoost.Python is a C++ library which enables seamless interoperability between C++ and the Python programming language.1.67.0-foss-2018b-Python-2.7.15: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.71.0-gompi-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
MVAPICH2This is an MPI 3.1 implementation. It is based on MPICH2 and MVICH.2.3.1-GCC-7.3.0-2.30: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
StdEnvThis package has no descriptiondefault: (custom)
SeabornSeaborn is a Python visualization library based on matplotlib. It provides a high-level interface for drawing attractive statistical graphics. 0.10.1-foss-2020a-Python-3.8.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
SalmonSalmon is a wicked-fast program to produce a highly-accurate, transcript-level quantification estimates from RNA-seq data.0.12.0-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.1.0-foss-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
HTSlibA C library for reading/writing high-throughput sequencing data. This package includes the utilities bgzip and tabix1.10.2-GCC-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.10.2-GCC-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.11-GCC-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.12-GCC-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.15.1-GCC-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.9-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
MATLABMATLAB is a high-level language and interactive environment that enables you to perform computationally intensive tasks faster than with traditional programming languages such as C, C++, and Fortran.2018a: (headnodes)
AGATAnother Gtf/Gff Analysis Toolkit: Suite of tools to handle gene annotations in any GTF/GFF format.0.6.2-foss-2020b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
GMAP-GSNAPGMAP: A Genomic Mapping and Alignment Program for mRNA and EST Sequences GSNAP: Genomic Short-read Nucleotide Alignment Program2021-05-27-GCC-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
GuileGuile is a programming language, designed to help programmers create flexible applications that can be extended by users or other programmers with plug-ins, modules, or scripts.1.8.8-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.8.8-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
ncursesThe Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses. 6.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.0-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.1-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.1-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.1-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.2-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.2-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.2-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.2-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.3: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.3-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.3-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
graphite2Graphite is a "smart font" system developed specifically to handle the complexities of lesser-known languages of the world.1.3.14-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
AutoDock-VinaAutoDock Vina is an open-source program for doing molecular docking.1.2.3-foss-2021a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
MUMPSA parallel sparse direct solver5.2.1-foss-2019b-metis: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
BEDToolsThe BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM.2.29.1-GCC-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
HH-suiteThe HH-suite is an open-source software package for sensitive protein sequence searching based on the pairwise alignment of hidden Markov models (HMMs).3.3.0-gompi-2021a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.3.0-gompi-2021b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
ScaLAPACKThe ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers.2.0.2-gompi-2018a-OpenBLAS-0.2.20: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.0.2-gompi-2018b-OpenBLAS-0.3.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.0.2-gompi-2019a-OpenBLAS-0.3.5: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.0.2-gompi-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.0.2-gompic-2018b-OpenBLAS-0.3.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.0.2-gompic-2019a-OpenBLAS-0.3.5: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.0.2-gompic-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.1.0-gompi-2020a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.1.0-gompi-2020b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.1.0-gompi-2021a-fb: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.1.0-gompi-2021b-fb: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.1.0-gompic-2020b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.2.0-gompi-2022a-fb: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
mcrmcr is the MATLAB Compiler Runtime. This allows MATLAB code, compiled elsewhere, to be run.2018a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
NAMDNAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems.2.13-foss-2018b-mpi: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.13-fosscuda-2018b: (heroes, dwarves, wizards)
RStudio-ServerThis is the RStudio Server version. RStudio is a set of integrated tools designed to help you be more productive with R. The server can be started with: rserver --server-daemonize=0 --www-port=8787 If you need a database config one can be created with: MYTMP=`mktemp -d` && echo -e "provider=sqlite\ndirectory=${MYTMP}/sqlite" > "${MYTMP}/db.conf" and then used with: rserver ... --database-config-file="${MYTMP}/db.conf" 1.2.5042-foss-2019b-Java-11: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.3.1093-foss-2020a-Java-11-R-4.0.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2022.07.2+576-foss-2022a-Java-11-R-4.2.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
zlibzlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system. 1.2.11: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.2.11-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.2.11-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.2.11-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.2.11-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.2.11-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.2.11-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.2.11-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.2.11-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.2.12: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.2.12-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.2.12-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
HMMERHMMER is used for searching sequence databases for homologs of protein sequences, and for making protein sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs). Compared to BLAST, FASTA, and other sequence alignment and database search tools based on older scoring methodology, HMMER aims to be significantly more accurate and more able to detect remote homologs because of the strength of its underlying mathematical models. In the past, this strength came at significant computational expense, but in the new HMMER3 project, HMMER is now essentially as fast as BLAST.3.2.1-gompi-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.3.2-gompi-2021a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.3.2-gompi-2021b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
FLUENTANSYS FLUENT software contains the broad physical modeling capabilities needed to model flow, turbulence, heat transfer, and reactions for industrial applications ranging from air flow over an aircraft wing to combustion in a furnace, from bubble columns to oil platforms, from blood flow to semiconductor manufacturing, and from clean room design to wastewater treatment plants.19.1: (custom)
20.2: (custom)
DFTB+DFTB+ is a fast and efficient versatile quantum mechanical simulation package. It is based on the Density Functional Tight Binding (DFTB) method, containing almost all of the useful extensions which have been developed for the DFTB framework so far. Using DFTB+ you can carry out quantum mechanical simulations like with ab-initio density functional theory based packages, but in an approximate way gaining typically around two order of magnitude in speed.18.2-foss-2018b-Python-2.7.15: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
19.1-foss-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
miRDeep2miRDeep2 is a completely overhauled tool which discovers microRNA genes by analyzing sequenced RNAs 0.1.3-foss-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
motifMotif refers to both a graphical user interface (GUI) specification and the widget toolkit for building applications that follow that specification under the X Window System on Unix and other POSIX-compliant systems. It was the standard toolkit for the Common Desktop Environment and thus for Unix.2.3.8-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.3.8-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.3.8-foss-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
nodejsNode.js is a platform built on Chrome's JavaScript runtime for easily building fast, scalable network applications. Node.js uses an event-driven, non-blocking I/O model that makes it lightweight and efficient, perfect for data-intensive real-time applications that run across distributed devices.10.14.1-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
10.15.3-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
12.19.0-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
16.15.1-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
libxml2Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable outside of the Gnome platform). 2.10.3-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.9.10-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.9.10-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.9.10-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.9.10-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.9.13-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.9.4-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.9.7-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.9.8-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.9.8-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.9.9-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
code-serverRun VS Code on any machine anywhere and access it in the browser.4.9.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
expatExpat is an XML parser library written in C. It is a stream-oriented parser in which an application registers handlers for things the parser might find in the XML document (like start tags).2.2.5-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.2.5-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.2.6-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.2.7-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.2.9-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.2.9-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.2.9-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.4.1-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.4.8-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.4.9-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
numbaNumba is an Open Source NumPy-aware optimizing compiler for Python sponsored by Continuum Analytics, Inc. It uses the remarkable LLVM compiler infrastructure to compile Python syntax to machine code.0.47.0-foss-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
canuCanu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing1.9-GCCcore-8.3.0-Java-11: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.1.1-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
VSEARCHVSEARCH supports de novo and reference based chimera detection, clustering, full-length and prefix dereplication, rereplication, reverse complementation, masking, all-vs-all pairwise global alignment, exact and global alignment searching, shuffling, subsampling and sorting. It also supports FASTQ file analysis, filtering, conversion and merging of paired-end reads.2.14.2-GCC-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
texinfoTexinfo is the official documentation format of the GNU project.6.5-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.7-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
RapidJSONA fast JSON parser/generator for C++ with both SAX/DOM style API1.1.0-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.1.0-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
JupyterLabJupyterLab is the next-generation user interface for Project Jupyter offering all the familiar building blocks of the classic Jupyter Notebook (notebook, terminal, text editor, file browser, rich outputs, etc.) in a flexible and powerful user interface. JupyterLab will eventually replace the classic Jupyter Notebook.1.2.5-foss-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
GitPythonGitPython is a python library used to interact with Git repositories 3.1.0-GCCcore-8.3.0-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
PythonPython is a programming language that lets you work more quickly and integrate your systems more effectively.2.7.14-GCCcore-6.4.0-bare: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.7.14-foss-2018a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.7.15-GCCcore-7.3.0-bare: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.7.15-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.7.15-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.7.15-iomkl-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.7.16-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.7.18-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.7.18-GCCcore-10.3.0-bare: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.7.18-GCCcore-11.3.0-bare: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.7.18-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.10.4-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.10.4-GCCcore-11.3.0-bare: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.10.8-GCCcore-12.2.0-bare: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.11.2-GCCcore-12.2.0-bare: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.6.4-foss-2018a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.6.6-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.6.6-fosscuda-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.7.0-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.7.0-iomkl-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.7.2-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.7.4-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.8.2-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.8.6-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.9.5-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.9.5-GCCcore-10.3.0-bare: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.9.6-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.9.6-GCCcore-11.2.0-bare: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
NSSNetwork Security Services (NSS) is a set of libraries designed to support cross-platform development of security-enabled client and server applications.3.39-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.45-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.51-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.57-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.65-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.79-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
BUSCOBUSCO: assessing genome assembly and annotation completeness with single-copy orthologs4.0.6-foss-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
fastStructurefastStructure is a fast algorithm for inferring population structure from large SNP genotype data. It is based on a variational Bayesian framework for posterior inference and is written in Python2.x. 1.0-foss-2019b-Python-2.7.16: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
SAMtoolsSAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.0.1.20-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.1.20-foss-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.10-GCC-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.13-GCC-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.7-foss-2018a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.9-GCC-7.3.0-2.30: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.9-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
yaffYaff stands for 'Yet another force field'. It is a pythonic force-field code.1.6.0-foss-2020a-Python-3.8.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
SQLiteSQLite: SQL Database Engine in a C Library3.20.1-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.21.0-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.24.0-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.27.2-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.29.0-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.31.1-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.33.0-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.35.4-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.36-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.38.3-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.39.4-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
BCFtoolsSamtools is a suite of programs for interacting with high-throughput sequencing data. BCFtools - Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants1.10.2-foss-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.9-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
AutoconfAutoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro calls. 2.69: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.69-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.69-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.69-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.69-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.69-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.69-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.71-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.71-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.71-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.71-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
iomklCompiler toolchain including Intel C/C++ and Fortran compilers, Intel MKL & OpenMPI.2018a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2019.01: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2020a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2020b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2021a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
RStudioRStudio Server enables you to provide a browser based interface to a version of R running on a remote Linux server, bringing the power and productivity of the RStudio IDE to server-based deployments of R.1.2.1335-foss-2018b-server: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.2.5033-foss-2019b-server: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.3.1073-foss-2020a-server: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
OpenMMOpenMM is a toolkit for molecular simulation.7.5.1-foss-2021b-DeepMind-patch: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
LAMELAME is a high quality MPEG Audio Layer III (MP3) encoder licensed under the LGPL.3.100-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.100-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.100-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.100-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.100-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
JuliaJulia is a high-level, high-performance dynamic programming language for numerical computing1.3.1-linux-x86_64: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
binutilsbinutils: GNU binary utilities2.28: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.28-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.30: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.30-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.31.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.31.1-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.32: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.32-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.34: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.34-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.35: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.35-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.36.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.36.1-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.37: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.37-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.38: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.38-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.39: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.39-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
MMseqs2MMseqs2: ultra fast and sensitive search and clustering suite10-6d92c-gompi-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
13-45111-gompi-2020b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5-9375b-foss-2018a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
gzipgzip (GNU zip) is a popular data compression program as a replacement for compress1.10-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.10-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.10-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.10-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.10-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.12-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.12-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.8-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
MesonMeson is a cross-platform build system designed to be both as fast and as user friendly as possible.0.50.0-GCCcore-8.2.0-Python-3.7.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.51.2-GCCcore-8.3.0-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.53.2-GCCcore-9.3.0-Python-3.8.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.55.3-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.58.0-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.58.2-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.62.1-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
ffnvcodecFFmpeg nvidia headers. Adds support for nvenc and nvdec. Requires Nvidia GPU and drivers to be present (picked up dynamically).11.1.5.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
GenomeToolsA comprehensive software library for efficient processing of structured genome annotations.1.6.1-GCC-8.3.0-Python-2.7.16: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
intel-compilersIntel C, C++ & Fortran compilers (classic and oneAPI)2021.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
Dassault/PowerDELTAPowerDELTA is a fully-featured surface mesh creation tool that prepares real life geometries for digital simulation with PowerFLOW2022-6: (custom)
CGALThe goal of the CGAL Open Source Project is to provide easy access to efficient and reliable geometric algorithms in the form of a C++ library.4.11.1-foss-2018b-Python-2.7.15: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.14.1-foss-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
ELPAEigenvalue SoLvers for Petaflop-Applications.2021.11.001-foss-2022a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
UCX-CUDAUnified Communication X An open-source production grade communication framework for data centric and high-performance applications This module adds the UCX CUDA support. 1.10.0-GCCcore-10.3.0-CUDA-11.3.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.11.2-GCCcore-11.2.0-CUDA-11.4.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.12.1-GCCcore-11.3.0-CUDA-11.7.0: (heroes, dwarves, wizards, warlocks)
BLISBLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries.0.8.1-GCC-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.9.0-GCC-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
numexprThe numexpr package evaluates multiple-operator array expressions many times faster than NumPy can. It accepts the expression as a string, analyzes it, rewrites it more efficiently, and compiles it on the fly into code for its internal virtual machine (VM). Due to its integrated just-in-time (JIT) compiler, it does not require a compiler at runtime.2.7.1-foss-2020a-Python-3.8.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
libglvndlibglvnd is a vendor-neutral dispatch layer for arbitrating OpenGL API calls between multiple vendors.1.2.0-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.3.2-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.3.3-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.4.0-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
GSLThe GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting.2.5-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.6-GCC-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.6-GCC-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.6-GCC-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.7-GCC-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.7-GCC-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
SuiteSparseSuiteSparse is a collection of libraries manipulate sparse matrices.5.1.2-foss-2018b-METIS-5.1.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.6.0-foss-2019b-METIS-5.1.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
FASTX-ToolkitThe FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing.0.0.14-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.0.14-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
MothurMothur is a single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community.1.40.5-foss-2018a-Python-2.7.14: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.41.0-foss-2018b-Python-2.7.15: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.43.0-foss-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
XvfbXvfb is an X server that can run on machines with no display hardware and no physical input devices. It emulates a dumb framebuffer using virtual memory.1.20.9-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
21.1.3-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
JsonCppJsonCpp is a C++ library that allows manipulating JSON values, including serialization and deserialization to and from strings. It can also preserve existing comment in unserialization/serialization steps, making it a convenient format to store user input files. 1.9.3-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.9.4-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.9.4-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.9.4-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
OpenFOAMOpenFOAM is a free, open source CFD software package. OpenFOAM has an extensive range of features to solve anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics and electromagnetics.7-foss-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
v1812-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
SConsSCons is a software construction tool.3.1.1-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
libcerflibcerf is a self-contained numeric library that provides an efficient and accurate implementation of complex error functions, along with Dawson, Faddeeva, and Voigt functions. 1.13-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.14-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.7-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
snappySnappy is a compression/decompression library. It does not aim for maximum compression, or compatibility with any other compression library; instead, it aims for very high speeds and reasonable compression.1.1.7-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.1.8-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.1.8-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.1.8-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.1.9-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.1.9-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
NinjaNinja is a small build system with a focus on speed.1.10.0-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.10.1-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.10.2-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.10.2-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.10.2-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.9.0-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.9.0-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
iccifortIntel C, C++ & Fortran compilers2018.1.163-GCC-6.4.0-2.28: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2018.3.222-GCC-7.3.0-2.30: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2019.1.144-GCC-8.2.0-2.31.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2019.5.281: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2020.1.217: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2020.4.304: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
UnZipUnZip is an extraction utility for archives compressed in .zip format (also called "zipfiles"). Although highly compatible both with PKWARE's PKZIP and PKUNZIP utilities for MS-DOS and with Info-ZIP's own Zip program, our primary objectives have been portability and non-MSDOS functionality.6.0-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.0-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.0-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.0-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.0-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
MonoAn open source, cross-platform, implementation of C# and the CLR that is binary compatible with Microsoft.NET.4.8.1.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
libdrmDirect Rendering Manager runtime library.2.4.100-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.4.102-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.4.106-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.4.110-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.4.92-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.4.99-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
googletestGoogle's framework for writing C++ tests on a variety of platforms1.10.0-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.11.0-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.11.0-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.11.0-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
prokkaProkka is a software tool for the rapid annotation of prokaryotic genomes.1.13-foss-2018a-BioPerl-1.7.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.13-iomkl-2018a-BioPerl-1.7.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.14.5-gompi-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
lz4LZ4 is lossless compression algorithm, providing compression speed at 400 MB/s per core. It features an extremely fast decoder, with speed in multiple GB/s per core.1.9.2-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.9.2-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.9.3-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.9.3-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.9.3-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.9.4-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
intelCompiler toolchain including Intel compilers, Intel MPI and Intel Math Kernel Library (MKL).2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2021a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
iompiIntel C/C++ and Fortran compilers, alongside Open MPI.2018a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2019.01: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2020a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2020b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2021a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
numactlThe numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program. 2.0.11-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.0.11-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.0.12-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.0.12-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.0.13-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.0.13-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.0.14-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.0.14-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.0.14-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.0.16-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
filevercmpfilevercmp function as in sort --version-sort.20141119-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
20191210-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
scikit-learnScikit-learn integrates machine learning algorithms in the tightly-knit scientific Python world, building upon numpy, scipy, and matplotlib. As a machine-learning module, it provides versatile tools for data mining and analysis in any field of science and engineering. It strives to be simple and efficient, accessible to everybody, and reusable in various contexts.0.21.3-foss-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.23.1-foss-2020a-Python-3.8.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
unrarRAR is a powerful archive manager.6.1.6: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
NextflowNextflow is a reactive workflow framework and a programming DSL that eases writing computational pipelines with complex data20.04.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
22.10.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
GDRCopyA low-latency GPU memory copy library based on NVIDIA GPUDirect RDMA technology.2.1-GCCcore-10.2.0-CUDA-11.1.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.2-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.3-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.3-GCCcore-11.3.0: (heroes, dwarves, wizards, warlocks)
xbitmapsprovides bitmaps for x1.1.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
pkg-configpkg-config is a helper tool used when compiling applications and libraries. It helps you insert the correct compiler options on the command line so an application can use gcc -o test test.c `pkg-config --libs --cflags glib-2.0` for instance, rather than hard-coding values on where to find glib (or other libraries). 0.29.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.29.2-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.29.2-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.29.2-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.29.2-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.29.2-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.29.2-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.29.2-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.29.2-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
JavaJava Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.1.8.0_144: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.8.0_162: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.8.0_192: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
11.0.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
magmaThe MAGMA project aims to develop a dense linear algebra library similar to LAPACK but for heterogeneous/hybrid architectures, starting with current Multicore+GPU systems.2.5.4-fosscuda-2020b: (heroes, dwarves, wizards, warlocks)
2.6.1-foss-2021a-CUDA-11.3.1: (heroes, dwarves, wizards, warlocks)
2.6.2-foss-2022a-CUDA-11.7.0: (heroes, dwarves, wizards, warlocks)
Voro++Voro++ is a software library for carrying out three-dimensional computations of the Voronoi tessellation. A distinguishing feature of the Voro++ library is that it carries out cell-based calculations, computing the Voronoi cell for each particle individually. It is particularly well-suited for applications that rely on cell-based statistics, where features of Voronoi cells (eg. volume, centroid, number of faces) can be used to analyze a system of particles.0.4.6-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
GDALGDAL is a translator library for raster geospatial data formats that is released under an X/MIT style Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for data translation and processing.2.2.3-foss-2018b-Python-3.6.6: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.2.3-iomkl-2018b-Python-2.7.15: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.0.2-foss-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.0.4-foss-2020a-Python-3.8.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.2.1-foss-2020b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.3.2-foss-2021b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.5.0-foss-2022a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
seqtkSeqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. It seamlessly parses both FASTA and FASTQ files which can also be optionally compressed by gzip.1.3-GCC-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
libxcLibxc is a library of exchange-correlation functionals for density-functional theory. The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.3.0.1-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.2.3-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.3.4-GCC-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.3.4-GCC-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.1.5-GCC-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.2.3-GCC-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
iccIntel C and C++ compilers2018.1.163-GCC-6.4.0-2.28: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2018.3.222-GCC-7.3.0-2.30: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2019.1.144-GCC-8.2.0-2.31.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
cuDNNThe NVIDIA CUDA Deep Neural Network library (cuDNN) is a GPU-accelerated library of primitives for deep neural networks.7.0.5-CUDA-9.0.176: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
7.1.4-CUDA-9.2.88: (warlocks)
7.1.4.18-fosscuda-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
7.4.2.24-gcccuda-2019a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
7.6.4.38-gcccuda-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.0.4.30-CUDA-11.1.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.2.1.32-CUDA-11.3.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.2.2.26-CUDA-11.4.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.4.1.50-CUDA-11.7.0: (heroes, dwarves, wizards, warlocks)
TOPASTOPAS wraps and extends Geant43.9: (custom)
SRA-ToolkitThe SRA Toolkit, and the source-code SRA System Development Kit (SDK), will allow you to programmatically access data housed within SRA and convert it from the SRA format3.0.7-gompi-2022b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
DoxygenDoxygen is a documentation system for C++, C, Java, Objective-C, Python, IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D. 1.8.14-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.8.16-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.8.17-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.8.20-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.9.1-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.9.1-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.9.4-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
nlohmann_jsonJSON for Modern C++3.10.5-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
vcflibvcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed genetic variations between individuals.1.0.2-GCC-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.0.2-GCC-9.3.0-Python-3.8.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
MultiQCAggregate results from bioinformatics analyses across many samples into a single report. MultiQC searches a given directory for analysis logs and compiles a HTML report. It's a general use tool, perfect for summarising the output from numerous bioinformatics tools.1.9-foss-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
wgetGNU Wget is a free software package for retrieving files using HTTP, HTTPS and FTP, the most widely-used Internet protocols. It is a non-interactive commandline tool, so it may easily be called from scripts, cron jobs, terminals without X-Windows support, etc.1.20.3-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
aria2aria2 is a lightweight multi-protocol & multi-source command-line download utility.1.36.0-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
TeXLiveTeX Live is an easy (we hope) way to get up and running with the TeX document production system.2019: (custom)
AmberAmber (originally Assisted Model Building with Energy Refinement) is software for performing molecular dynamics and structure prediction.20-foss-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
VCFtoolsThe aim of VCFtools is to provide easily accessible methods for working with complex genetic variation data in the form of VCF files.0.1.16-GCC-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
ACTCACTC converts independent triangles into triangle strips or fans.1.1-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
Dassault/PowerTHERMPowerTHERM is coupled with PowerFLOW to provide a complete, extensively validated digital thermal management solution2021.2.2: (custom)
BloscBlosc, an extremely fast, multi-threaded, meta-compressor library1.17.1-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
libjpeg-turbolibjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding. 1.5.3-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.0.0-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.0.2-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.0.3-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.0.4-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.0.5-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.0.6-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.0.6-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.1.3-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.1.4-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
pytest-xdistxdist: pytest distributed testing plugin The pytest-xdist plugin extends pytest with some unique test execution modes: * test run parallelization: if you have multiple CPUs or hosts you can use those for a combined test run. This allows to speed up development or to use special resources of remote machines. * --looponfail: run your tests repeatedly in a subprocess. After each run pytest waits until a file in your project changes and then re-runs the previously failing tests. This is repeated until all tests pass after which again a full run is performed. * Multi-Platform coverage: you can specify different Python interpreters or different platforms and run tests in parallel on all of them. Before running tests remotely, pytest efficiently rsyncs your program source code to the remote place. All test results are reported back and displayed to your local terminal. You may specify different Python versions and interpreters.2.3.0-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.5.0-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.5.0-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
liboggOgg is a multimedia container format, and the native file and stream format for the Xiph.org multimedia codecs.1.3.4-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.3.5-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
MakoA super-fast templating language that borrows the best ideas from the existing templating languages1.0.7-foss-2018b-Python-2.7.15: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.1.0-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.1.2-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.1.3-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.1.4-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.2.0-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
NSPRNetscape Portable Runtime (NSPR) provides a platform-neutral API for system level and libc-like functions.4.20-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.21-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.25-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.29-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.30-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.34-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
minimap2Minimap2 is a fast sequence mapping and alignment program that can find overlaps between long noisy reads, or map long reads or their assemblies to a reference genome optionally with detailed alignment (i.e. CIGAR). At present, it works efficiently with query sequences from a few kilobases to ~100 megabases in length at an error rate ~15%. Minimap2 outputs in the PAF or the SAM format. On limited test data sets, minimap2 is over 20 times faster than most other long-read aligners. It will replace BWA-MEM for long reads and contig alignment.2.17-GCC-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.18-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
gitGit is a free and open source distributed version control system designed to handle everything from small to very large projects with speed and efficiency.2.23.0-GCCcore-8.3.0-nodocs: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.28.0-GCCcore-10.2.0-nodocs: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.32.0-GCCcore-10.3.0-nodocs: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.33.1-GCCcore-11.2.0-nodocs: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.36.0-GCCcore-11.3.0-nodocs: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
xorg-macrosX.org macros utilities.1.19.1-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.19.2-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.19.2-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.19.2-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.19.2-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.19.2-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.19.3-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.19.3-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.19.3-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.19.3-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
kim-apiOpen Knowledgebase of Interatomic Models. KIM is an API and OpenKIM is a collection of interatomic models (potentials) for atomistic simulations. This is a library that can be used by simulation programs to get access to the models in the OpenKIM database. This EasyBuild only installs the API, the models can be installed with the package openkim-models, or the user can install them manually by running kim-api-collections-management install user MODELNAME or kim-api-collections-management install user OpenKIM to install them all. 2.1.3-foss-2020a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
ScytheScythe uses a Naive Bayesian approach to classify contaminant substrings in sequence reads. It considers quality information, which can make it robust in picking out 3'-end adapters, which often include poor quality bases. 0.994-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
groffGroff (GNU troff) is a typesetting system that reads plain text mixed with formatting commands and produces formatted output.1.22.4-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.22.4-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.22.4-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.22.4-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.22.4-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
GROMACSGROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. This is a GPU enabled build, containing both MPI and threadMPI binaries. 2019-foss-2018b: (elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2019-fosscuda-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2019.5-foss-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2019.5-fosscuda-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
TheanoTheano is a Python library that allows you to define, optimize, and evaluate mathematical expressions involving multi-dimensional arrays efficiently.1.0.4-foss-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
PCRE2The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5. 10.33-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
10.34-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
10.35-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
10.36-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
10.40-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
GMTGMT is an open source collection of about 80 command-line tools for manipulating geographic and Cartesian data sets (including filtering, trend fitting, gridding, projecting, etc.) and producing PostScript illustrations ranging from simple x-y plots via contour maps to artificially illuminated surfaces and 3D perspective views; the GMT supplements add another 40 more specialized and discipline-specific tools. 5.4.3-iomkl-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
6.0.0-foss-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
HDFHDF (also known as HDF4) is a library and multi-object file format for storing and managing data between machines. 4.2.15-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.2.15-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.2.15-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
zarrZarr is a Python package providing an implementation of compressed, chunked, N-dimensional arrays, designed for use in parallel computing.2.4.0-foss-2020a-Python-3.8.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
flexFlex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text. 2.6.3: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.6.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.6.4-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.6.4-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.6.4-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.6.4-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.6.4-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.6.4-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.6.4-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.6.4-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.6.4-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.6.4-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
DendroPyA Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters.4.4.0-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
impiIntel MPI Library, compatible with MPICH ABI2018.5.288-iccifort-2019.5.281: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2021.2.0-intel-compilers-2021.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
GLibGLib is one of the base libraries of the GTK+ project2.54.3-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.54.3-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.60.1-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.62.0-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.64.1-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.66.1-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.68.2-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.72.1-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
CythonCython is an optimising static compiler for both the Python programming language and the extended Cython programming language (based on Pyrex). 0.27.3-GCCcore-8.3.0-Python-2.7.16: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
nanopolishSoftware package for signal-level analysis of Oxford Nanopore sequencing data.0.13.2-foss-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.13.3-foss-2020b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
protobuf-pythonPython Protocol Buffers runtime library.3.10.0-foss-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.10.0-fosscuda-2019b-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.14.0-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.17.3-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.17.3-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.19.4-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
MathematicaMathematica is a computational software program used in many scientific, engineering, mathematical and computing fields.12.0.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
12.1.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
TkTk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages.8.6.10-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.6.10-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.6.11-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.6.11-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.6.12-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.6.8-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.6.8-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.6.9-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
8.6.9-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
fileThe file command is 'a file type guesser', that is, a command-line tool that tells you in words what kind of data a file contains.5.35-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.45-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
jbigkitJBIG-KIT is a software implementation of the JBIG1 data compression standard (ITU-T T.82), which was designed for bi-level image data, such as scanned documents.2.1-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.1-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.1-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
AmberToolsAmberTools consists of several independently developed packages that work well by themselves, and with Amber itself. The suite can also be used to carry out complete molecular dynamics simulations, with either explicit water or generalized Born solvent models.20-foss-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
bzip2bzip2 is a freely available, patent free, high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression. 1.0.6-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.0.6-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.0.6-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.0.8-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.0.8-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.0.8-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.0.8-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.0.8-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.0.8-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.0.8-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
gnuplotPortable interactive, function plotting utility5.2.5-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.2.8-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
5.4.1-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
help2manhelp2man produces simple manual pages from the '--help' and '--version' output of other commands.1.47.12-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.47.16-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.47.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.47.4-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.47.4-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.47.7-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.47.8-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.48.3-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.48.3-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.49.2-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.49.2-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
gettextGNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we may build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools and documentation0.19.8.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.19.8.1-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.19.8.1-GCCcore-6.4.0-libxml2-2.9.7: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.19.8.1-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.19.8.1-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.20.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.20.1-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.20.1-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.21: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.21-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.21-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.21-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.21-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.21.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
fosscudaGCC based compiler toolchain __with CUDA support__, and including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2019a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2020b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
BottleneckFast NumPy array functions written in C1.3.2-foss-2020a-Python-3.8.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
pandaspandas is an open source, BSD-licensed library providing high-performance, easy-to-use data structures and data analysis tools for the Python programming language.1.1.2-foss-2020a-Python-3.8.2: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
tqdmA fast, extensible progress bar for Python and CLI4.41.1-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
GObject-IntrospectionGObject introspection is a middleware layer between C libraries (using GObject) and language bindings. The C library can be scanned at compile time and generate a metadata file, in addition to the actual native C library. Then at runtime, language bindings can read this metadata and automatically provide bindings to call into the C library.1.54.1-foss-2018b-Python-2.7.15: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.63.1-GCCcore-8.3.0-Python-3.7.4: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.66.1-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.72.0-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
HarfBuzzHarfBuzz is an OpenType text shaping engine.2.2.0-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.6.4-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.6.7-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.2.1-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
intltoolintltool is a set of tools to centralize translation of many different file formats using GNU gettext-compatible PO files.0.51.0-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.51.0-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.51.0-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.51.0-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.51.0-GCCcore-6.4.0-Perl-5.26.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.51.0-GCCcore-7.3.0-Perl-5.28.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.51.0-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.51.0-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
0.51.0-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
libtoolGNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface. 2.4.6: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.4.6-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.4.6-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.4.6-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.4.6-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.4.6-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.4.6-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.4.6-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.4.6-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.4.7-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.4.7-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
libffiThe libffi library provides a portable, high level programming interface to various calling conventions. This allows a programmer to call any function specified by a call interface description at run-time.3.2.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.2.1-GCCcore-6.4.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.2.1-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.2.1-GCCcore-8.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.2.1-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.3-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.3-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.3-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.4.2-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.4.2-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.4.4-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
scancelThis package has no description1.0: (custom)
ICUICU is a mature, widely used set of C/C++ and Java libraries providing Unicode and Globalization support for software applications.61.1-GCCcore-7.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
64.2-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
66.1-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
67.1-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
69.1-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
69.1-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
71.1-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
72.1-GCCcore-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
PostgreSQLPostgreSQL is a powerful, open source object-relational database system. It is fully ACID compliant, has full support for foreign keys, joins, views, triggers, and stored procedures (in multiple languages). It includes most SQL:2008 data types, including INTEGER, NUMERIC, BOOLEAN, CHAR, VARCHAR, DATE, INTERVAL, and TIMESTAMP. It also supports storage of binary large objects, including pictures, sounds, or video. It has native programming interfaces for C/C++, Java, .Net, Perl, Python, Ruby, Tcl, ODBC, among others, and exceptional documentation.13.2-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
14.4-GCCcore-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
libmathevalGNU libmatheval is a library (callable from C and Fortran) to parse and evaluate symbolic expressions input as text.1.1.11-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.1.11-GCCcore-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
nsyncnsync is a C library that exports various synchronization primitives, such as mutexes1.24.0-GCCcore-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.24.0-GCCcore-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.24.0-GCCcore-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
1.24.0-GCCcore-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
PETScPETSc, pronounced PET-see (the S is silent), is a suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations.3.11.2-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.12.4-foss-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
OpenMPIThe Open MPI Project is an open source MPI-3 implementation.2.1.2-GCC-6.4.0-2.28: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
2.1.2-iccifort-2018.1.163-GCC-6.4.0-2.28: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.1.1-GCC-7.3.0-2.30: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.1.1-gcccuda-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.1.1-iccifort-2018.3.222-GCC-7.3.0-2.30: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.1.3-GCC-8.2.0-2.31.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.1.3-gcccuda-2019a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.1.3-iccifort-2019.1.144-GCC-8.2.0-2.31.1: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.1.4-GCC-8.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.1.4-gcccuda-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
3.1.4-iccifort-2019.5.281: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.0.3-GCC-9.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.0.3-iccifort-2020.1.217: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.0.5-GCC-10.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.0.5-gcccuda-2020b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.0.5-iccifort-2020.4.304: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.1.1-GCC-10.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.1.1-GCC-11.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.1.1-intel-compilers-2021.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.1.4-GCC-11.3.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.1.4-GCC-12.2.0: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
netCDFNetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.4.6.1-foss-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.6.1-iomkl-2018b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.7.1-gompi-2019b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.7.4-gompi-2020a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.7.4-gompi-2020b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.8.0-gompi-2021a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.8.1-gompi-2021b: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
4.9.0-gompi-2022a: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)
BLASTBasic Local Alignment Search Tool, or BLAST, is an algorithm for comparing primary biological sequence information, such as the amino-acid sequences of different proteins or the nucleotides of DNA sequences.2.2.26-Linux_x86_64: (headnodes, elves-16c, elves-20c, heroes, dwarves, moles, wizards, warlocks)